Lemon Poppy Seed Muffins

22058 minutes
Tessa Arias

Author:

Tessa Arias

Modified: April 2, 2026

These Lemon Poppy Seed Muffins bake up tall, soft, and tender with bright lemon flavor. Includes the key tricks for bakery-style muffin tops.

Tessa's Recipe Rundown

Taste: Fresh, vibrant, and tangy lemon balanced with a sweet glaze.
Texture: Soft and tender inside with tall, domed tops and slightly crisp edges.
Ease: Simple mixing method, no mixer or special equipment required!
Why you’ll love this recipe: The quickest and easiest way to turn your kitchen into a fancy cafe.

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Most lemon poppy seed muffins fall into one of two camps: ultra tall and pretty but dry. Or, moist yet flat. I wanted both.

lemon poppyseed muffins on plates with lemon slices for garnish

After multiple test batches, I found the sweet spot comes down to three things: a slightly higher bake temperature, a mix of butter and oil, and letting the batter rest (just for 15 minutes!) before baking.

The result? Muffins that rise high with a soft, almost plush crumb and actually taste like lemon without any funky ingredients.

Recipe Ingredients

Muffins are simple, so each ingredient packs a powerful punch.

overhead view of all lemon poppyseed muffin recipe ingredients on a tray portioned and ready to go

All-Purpose Flour: Measured correctly (preferably by weight). Too much flour = dense and rubbery muffins.

Buttermilk: This is key for tenderness and flavor. The buttermilk acidity prevents too much gluten formation and the thick texture creates taller muffins. Use plain kefir as 1:1 substitute.

Butter + Oil (Important!): Butter brings flavor, while oil keeps the muffins soft for longer. In testing, using only butter made the muffins slightly drier the next day. Use any neutral oil (vegetable, avocado, etc.).

Baking Powder: This recipe uses a full tablespoon for strong lift. If you’re at altitude, you may need to reduce the measurement slightly.

Lemon Zest + Juice: Zest is where the real flavor lives! The icing contains both juice and zest for maximum lemon flavor, so don’t skip it. You’ll need about 4 medium lemons total (I always buy more in case I’m stuck with a dry lemon). 

Poppy Seeds: Always check freshness. If they smell stale or oily, they’ll taste that way in the muffins. I learned this the hard way!

Almond Extract (Optional): In addition to the vanilla, a tiny amount of almond extract enhances the lemon flavor without making the muffins taste almondy. I highly recommend trying it!

How to Make Lemon Poppy Seed Muffins (Step by Step)

mixing dry ingredients for lemon poppyseed muffins in a glass bowl with a whisk
1

Mix dry ingredients. In a large bowl, whisk together flour, sugar, poppy seeds, baking powder, and salt.

adding wet ingredients to dry ingredients for lemon poppyseed muffins
2

Add wet ingredients into dry ingredients. Make a well in the center of the dry ingredients and pour in the wet.

lemon poppyseed muffin batter in glass mixing bowl with spatula
3

Stir gently to combine. The batter will be slightly lumpy. Don’t overmix.

lemon poppyseed muffin batter in glass mixing bowl with spatula after resting 15 minutes showing it has become thicker
4

Rest the batter. If time permits, allow the batter to sit for 15-20 minutes so it thickens slightly for taller muffins.

muffin batter in muffin tin, spaced into every other cavity
5

Fill muffin tin. Line every other cavity with liners and fill completely full for tall muffins. Use two tins, or bake in batches, cooling tin between bakes.

freshly baked muffins in muffin tin, spaced into every other cavity
6

Bake. For 18-19 minutes, or until the edges are golden and a toothpick inserted into the center comes out clean.

lemon poppyseed muffin icing in bowl with a whisk to show thick consistency
7

Make the glaze. Whisk together powdered sugar and lemon juice until a thick icing forms. It should fall off the whisk in ribbons.

glazing lemon poppyseed muffins on a wire rack with a spoon
8

Glaze. Using a spoon, pour icing over cooled muffins.

garnishing lemon poppyseed muffins with fresh lemon zest
9

Garnish with lemon zest. This isn’t only pretty, but adds extra lemon flavor!

Tessa’s Tips for Taller Muffins

  1. Fill your muffin tin cavities completely full with batter. This will result in taller muffins with more pronounced muffin tops (and those slightly crisp edges!).
  2. Space out your muffins. Fill only every other cavity with muffin batter. This is done most easily with two muffin tins. This allows extra room for the muffins to rise tall, as well as enough air flow to cook the muffins more evenly.
  3. Rest your batter for at least 15 minutes before baking. You can do this in the mixing bowl or in the muffin tin. Rest up to overnight, covered.

Sprinkle of Science

Storage & Make ahead

Store in an airtight container for up to 2 days. To make ahead, mix the batter and refrigerate overnight, then bake straight from the fridge.

Freezing Instructions

Freeze unglazed muffins for up to 3 months. Thaw at room temperature. Glaze after thawing for best texture.

Test Kitchen Notes


The first version of this recipe was published in 2012, then revamped and updated in 2020. Recently, in 2026, I decided to make the recipe and felt underwhelmed by the results. 

I’ve learned a lot in just 6 years, so I began testing out some tweaks to achieve taller, more flavorful muffins without sacrificing a soft and tender texture. 

behind the scenes photo of testing the muffin recipe

1. Adjusting Ratios

I increased the flour and sugar slightly for better structure, as well as switching to buttermilk for better flavor and height, and adding more lemon zest. Lastly, a touch of oil alongside the melted butter helped create a tender texture that stays soft for longer.

iPhone photos of muffins in the test kitchen, one batch baked at 375°F and the other at 400°F

2. Baking Temperatures

Next up I experimented with baking temperatures. The key to tall muffins is a high temperature, but I didn’t want the edges to burn!

iPhone photo of 2 lemon poppyseed muffins compared, one baked immediately and one baked after resting the batter 15 minutes, showing a much taller muffin top

3. Resting Batter

The original recipe recommended an overnight rise, so my recipe tester experimented with resting intervals and we learned we really only needed a 15-minute rest (but an overnight rise works too if you want to prep ahead). 

Frequently Asked Questions

How do you get tall muffin tops?

Fill the muffin cups completely full, fill every other cavity, and let the batter rest before baking. These three steps create a thicker batter and better heat circulation, which leads to higher domes.

Can I skip the batter resting time?

Yes, but your muffins won’t rise as tall. Even 15 minutes makes a noticeable difference in height and texture. Which is about the time it takes to preheat the oven and clean up!

Can I substitute buttermilk?

The best substitute is plain kefir. Adding lemon juice or vinegar to milk just doesn’t have the same effect but can work in a pinch if you’re out of options.

Why are my muffins dense?

Overmixing is the most common cause. Stir just until combined, lumps are okay. Too much flour or expired baking powder can also lead to dense muffins.

Can I make these ahead of time?

Yes! Bake and store for up to 2 days, or freeze without glaze for longer storage. You can also mix the batter and refrigerate overnight, then bake straight from the fridge.

Can I make these without poppy seeds?

Yep, just omit them! The muffins will still have great flavor.

lemon poppyseed muffin on a plate with bite taken out to show soft interior
Yields: 9 muffins

How To Make

Lemon Poppy Seed Muffins

Yields: 9 muffins
Prep Time 40 minutes
Cook Time 18 minutes
Total Time 58 minutes
Review Recipe Print Recipe
Prep Time 40 minutes
Cook Time 18 minutes
Total Time 58 minutes
Review Recipe Print Recipe
These Lemon Poppy Seed Muffins bake up tall, soft, and tender with bright lemon flavor. Includes the key tricks for bakery-style muffin tops.

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Ingredients

For the muffins:

  • 2 1/4 cups (286 grams) all-purpose flour, measured correctly
  • 1 cup (200 grams) granulated sugar
  • 2 tablespoons poppy seeds*
  • 1 tablespoon baking powder
  • 1/2 teaspoon fine sea salt
  • 1 cup (240 grams) buttermilk, at room temperature
  • 1 stick (113 grams) unsalted butter, melted and cooled
  • 2 tablespoons neutral oil (such as avocado or canola)
  • 2 large eggs, at room temperature
  • 2 tablespoons fresh lemon zest**
  • 2 tablespoons fresh lemon juice
  • 1 teaspoon vanilla extract
  • ¼ teaspoon almond extract, optional

For the lemon glaze:

  • 1 cup (125 grams) powdered sugar, sifted
  • 2 tablespoons fresh lemon juice
  • Lemon zest, for garnish**

Instructions

Make the muffins:

  • Preheat the oven to 375°F. Line two standard muffin tins with 9 paper liners, spacing them in every other cavity to allow for air flow and larger muffin tops.
  • In a large bowl, whisk together the flour, sugar, poppy seeds, baking powder, and salt.
  • In a small bowl, whisk together the buttermilk, cooled melted butter, oil, eggs, lemon zest, juice, vanilla extract, and almond extract (if using). Pour into the dry ingredients and stir with a rubber spatula until just combined.
  • If time permits, rest the batter at room temperature for 15 to 20 minutes to encourage taller muffin tops. You can also chill this batter, covered, overnight in the fridge. Bake from the fridge.
  • Fill each muffin liner completely full with batter. The batter should mound slightly above the rim.
  • Bake until the edges are golden brown and a toothpick inserted in the center comes out clean, about 18 to 19 minutes. Let cool in pan for 5 minutes, then transfer to wire rack to cool completely.

Make the glaze:

  • In a small bowl, stir together the powdered sugar and lemon juice until a smooth, thick glaze forms. Drizzle or dip the cooled muffins. Top with lemon zest. If transporting or storing, let the glaze set beforehand.
  • Serve immediately, or store in an airtight container at room temperature for up to 2 days. Muffins can also be frozen for up to 3 months.

Notes

*Double-check the expiration date on your poppy seeds and take a quick sniff before using. If they smell off, that flavor will carry into your muffins.
** You’ll need about 4 medium lemons. Zest the lemons (including what’s needed for the glaze) before juicing.

This recipe was originally published in 2012 and updated in 2026 with recipe improvements, new photos, and more baking tips. Photos by Joanie Simon.

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Robin Shultz
Robin Shultz
4 years ago

LOVE THEM! I had unexpected company and only one egg. I’m so glad I was able to find this recipe and was able to make a tasty treat for my guests. EVERYONE loved them! (I added a streusel topping before baking. One can’t have too much goodness with their morning coffee.)

Emily @ Handle the Heat
Emily @ Handle the Heat
Admin
Reply to  Robin Shultz
4 years ago

Wonderful! So glad this recipe worked perfectly for your company and that everyone enjoyed!

Christine
Christine
4 years ago

The texture and moisture was PERFECT!!! Best muffin I’ve ever had in those terms…even better than muffins I’ve gotten at bakeries!
The glaze was very good. The muffin itself could have used some more lemon flavor. Next time I’ll experiment with a bit of lemon extract. That’s just my preference to make a recipe that is already SO delicious better suited for someone who likes more of a punch.

Emily @ Handle the Heat
Emily @ Handle the Heat
Admin
Reply to  Christine
4 years ago

Yay! So happy you enjoyed them, Christine! Thanks for taking the time to write such a rave review, we appreciate your feedback as well!

Taji
Taji
4 years ago

Hi,
What can happen if you over mix?

Emily @ Handle the Heat
Emily @ Handle the Heat
Admin
Reply to  Taji
4 years ago

Hi Taji! Over mixed muffins are not light and fluffy, they’re a more tough muffin with a chewy texture. They can have peaked tops and develop “tunnel-shaped” holes in the interior. Sometimes they may not even rise to full volume. We recommend that your batter still contains a few traces of flour when you stop mixing. I hope that helps!

Robin Macleod
Robin Macleod
4 years ago

Hi Tessa,

Can I use bread flour for your Lemon Poppyseed Muffins and Ultimate Muffins in lieu of all-purpose?
I am looking forward to making them.

Many thanks,
Robin

Emily @ Handle the Heat
Emily @ Handle the Heat
Admin
Reply to  Robin Macleod
4 years ago

We haven’t tried that, though we always recommend making the recipe as written for best results. Bread flour has a higher protein content, so we don’t typically use it in muffin recipes as it can result in a tougher, more chewy muffin.

Robin Macleod
Robin Macleod
Reply to  Emily @ Handle the Heat
4 years ago

Hi Emily,

Bread flour is used in your Easy Bakery Style Banana muffins, so before I make these can you please let me know why is doesn’t work for other muffin recipes. I am sure there is a very good reason but I need to know how it works for one and not others.

Warmest wishes,
Robin

Emily @ Handle the Heat
Emily @ Handle the Heat
Admin
Reply to  Robin Macleod
4 years ago

No problem, Robin! The bread flour was used in the Banana Muffin recipe to help absorb more of the moisture of the bananas and to help with its structure. Tessa hasn’t actually used bread flour in any other muffin recipes, just all-purpose flour, but you’re more than welcome to try with this one 🙂

fatima
fatima
4 years ago

Amazing recipe! cant fault it! i tried it with orange instead of lemon and it was also amazing!

Emily @ Handle the Heat
Emily @ Handle the Heat
Admin
Reply to  fatima
4 years ago

Delicious! Love making them with orange instead, so happy you enjoyed this recipe 🙂

Samar
Samar
4 years ago

These turned out delicious! Thanks

Emily @ Handle the Heat
Emily @ Handle the Heat
Admin
Reply to  Samar
4 years ago

So happy you enjoyed them, thanks for letting us know! 🙂

Deina
Deina
4 years ago

Hi Tessa,
I live half time in Sun Valley, Idaho at 5900 feet. I have looked at so many recipes that were meant for altitude but it looks like one needs to “try” one or more of three alteration possibilities for baking at altitude (less leavening, higher/lower heat/ less or more flour…eeeks!) ; that requires lots of time and often wasted ingredients.

Do you have any foolproof tips? For example, I recently made a delish lemon meringue pie. One recipe said make the meringue at the same time as the custard…a bit daunting…and spread the egg white on the hot custard and bake. Another was make the custard and refrigerate for 2 hours or more (I did 2 hrs) cover w/the egg whites and bake for 10 min at 400. It looked great tasted good but the custard turned runny.

Any advice?
Love what you do and so happy to see you succeed! Keep it up!

Jesche
Jesche
4 years ago

Hello, I tried the cheatsheet recipe today, however this version of the recipe is way better than that in the Ultimate Cheatsheet for muffins. The cheatsheet recipe lacks flavor and tender crumb whilst this version of your recipe is perfect!
Thanks for sharing your recipes!

Alena
Alena
4 years ago

I rarely comment on recipes after I have made alterations because that would be unfair, but this recipe still holds up brilliantly! The muffin was soft and baked up super well without the greasy bottom, it was (sorry) MOIST and fluffy. Definitely make this!

Alterations that I made:
– Reduced granulated sugar by half a cup. If your family doesn’t like sweet recipes, this won’t affect the muffins.
– Lemon drizzle instead of glaze. Ran out of powdered sugar and I’m unorganised. I used the juice of a lemon and 55 grams of granulated sugar then stirred until the sugar dissolved. Poked holes into the muffin and spooned the drizzle over it. FOLLOW THE RECIPE! The drizzle didn’t get absorbed well, but this was still super delicious. If you don’t have powdered sugar I recommend this.

reenu
reenu
4 years ago

can this be doubled to make a cake instead?

SherC
SherC
4 years ago

First time attempting lemon poppy seed muffins, definitely worried about the texture because I did not want a dense blob. Surprisingly they came out really good, I was really pleased with the result. I already doubled the poppy seeds and lemon juice, but my hubby requested to triple them next time.

I did a some modification; I didn’t have any AP flour so I used cake flour. I didn’t melt the butter but leave it to soften and beat it with sugar which I cut in half since we are trying to go keto. Then top with almond slices before baking. The muffins even have top muffin tops, moist and fluffy soft, better than store bought muffins my hubby claimed lol

Thank you for the recipe, it is a keeper!

Donna
Donna
4 years ago

Can I substitute orange juice and orange zest for the lemon to make orange and poppyseed muffins?